eNews

#01 2026

Sub-Saharan Africa has lost nearly a quarter of its biodiversity

By Dr Hayley Clements and Prof. Dave Thompson, with contributions from SAEON staff and research associates

Archives

  • 200 experts in African biodiversity contribute to comprehensive regional assessment.
  • Sub-Saharan Africa has already lost 24% of its biodiversity since pre-industrial times.
  • Large mammals have declined most severely.
  • 80% of remaining wild plants, animals live outside of formally protected lands.

A new African-led study finds that sub-Saharan Africa has already lost 24% of its biodiversity since pre-industrial times. This means that, on average, the populations of diverse plants and animals across the region have declined by nearly a quarter. Some species, particularly large mammals, have declined much more severely, and protected areas are vital as safeguards for these species. The research also highlights that more than 80% of the region’s remaining wild plants and animals live outside of formally protected lands. 

The study, published in Nature, provides the most comprehensive assessment of biodiversity intactness yet produced for sub-Saharan Africa. A unique feature of the project* is that it brings together a wide range of ecological knowledge from 200 experts in Africa’s diverse plants and animals, including researchers, field ecologists, rangers, tour guides, and museum curators working in the region’s changing landscapes (Figure 1). This enormous undertaking took over five years to complete.

“Many global biodiversity assessments do not represent African conditions well because they rely on sparse local measurements and draw insights from more data-rich regions of the world, where contexts are very different,” says lead author Dr Hayley Clements, from the Centre for Sustainability Transitions (CST) at Stellenbosch University. “By working directly with the people who study and manage African ecosystems, we were able to capture a much more realistic picture of where biodiversity is declining, where it is being sustained, and why.” 

Several SAEON staff and honorary research associates were among the 200 experts working in the region who contributed their expertise on terrestrial African species and ecosystems to the assessment. SAEON inputs centred primarily on plants and vegetation across South and Southern Africa, and represent a combined total exceeding 100 years academic and on-the ground expertise.

Figure 1. Attributes of the 200 participants, reflecting expertise across multiple taxonomic groups and regions. Reproduced from: Clements, H et al. The bii4africa dataset of faunal and floral population intactness estimates across Africa’s major land uses. Sci Data 11, 191 (2024). https://doi.org/10.1038/s41597-023-02832-6

Professor Helga van der Merwe

Professor Helga van der Merwe

Professor Helga van der Merwe, SAEON Arid Systems Ecologist and Extraordinary Associate Professor at North-West University, has considerable expertise in Succulent Karoo, Nama Karoo and arid Savanna systems, particularly in the assessment of long-term vegetation change in rangelands. ‘’This project was exciting for me as it brought together a large group of people with diverse expertise to get an improved assessment of the state of biodiversity in Africa – a research-poor continent compared to countries in the Global North. It was interesting to experience how the various expert opinions were ‘standardised’ in order to draw informed conclusions”.

Professor Dave Thompson

Professor Dave Thompson, SAEON Biodiversity Scientist and Extraordinary Professor at North-West University, studies the herbaceous component of savannas and grasslands, and how these systems respond to the disturbances of fire, herbivory, alien invasive taxa, nutrient flux, and climate extremes. “The expert solicitation employed in the BII project is the epitome of the adage ‘The whole is greater than the sum of its parts’. Sharing and combing the knowledge of individuals across ecological systems is the only way to assess environmental change at large spatial and temporal scales. The product carries the synergy and functionality required to tackle contemporary, complex challenges”.

Dr Ryan Blanchard

Dr Ryan Blanchard, SAEON Fynbos Node Manager and research fellow in the Centre for Sustainability Transitions at Stellenbosch University, was one of the contributing experts. He is a biodiversity expert working to understand how different drivers of change, such as invasive alien species, fire, and climate, impact biodiversity and associated ecosystem services. “I see this approach as a major step forward in improving biodiversity intactness indicators. The study is likely to increase confidence in the tool and the BII is set to potentially play a larger role in shaping future policy and land use decisions.”

This is just a spacer – couldn’t figure out another way

Dr Jasper Slingsby

Dr Jasper Slingsby from the University of Cape Town and Honorary research associate at the SAEON Fynbos Node focused on the winter rainfall region, including the Fynbos and Succulent Karoo biomes of South Africa. “For me, a key contribution of the approach adopted in this study is that it allowed a semi-quantitative synthesis of the ecosystem specific impacts of a range of change drivers. This is key, because each ecosystem responds in very different ways. For example, Fynbos is very sensitive to livestock and many other extractive uses, while other biomes have evolved with large mammals and are more resilient. We have many case studies demonstrating these kinds of nuances, but they don’t cover the whole region. This approach of blending expert opinion with wall-to-wall datasets is the best we can do for now, and helps highlight where we need to focus further efforts.”

This is just a spacer – couldn’t figure out another way

Professor Mariska te Beest

Professor Mariska te Beest from Utrecht University, the Netherlands, research associate at Nelson Mandela University, and honorary researcher associated with the SAEON Grasslands-Forests-Wetlands Node, was a contributing expert. Her research focusses on systems ecology and conservation, with a strong focus on ecological feedbacks between plants and climate, fire, herbivory and soils. Most of her research is related to open grass-dominated ecosystems and conserving their unique biodiversity. “The loss of biodiversity worldwide is one of humanity’s greatest current challenges. This study fills an important gap in our biodiversity knowledge of African ecosystems, that are generally underrepresented in global analyses. By providing a greater understanding of drivers of biodiversity loss and identifying areas with remaining biodiversity intactness, this study is fundamentally important to help decision-makes making the right choices to conserve our precious African biodiversity”.

Expert contributions to the project were also made by SAEON collaborators from South African, African and international universities and conservation agencies, who provided inputs across taxonomic groups – especially plants, birds and mammals.

Bottom-up method

The biodiversity data underlying this assessment come from a structured expert-elicitation process. The 200 contributors independently estimated how different human activities—from croplands to livestock grazing to urbanisation—affect the population abundance of different species in different areas. They then discussed the trends collectively in facilitated online meetings, providing an opportunity to learn from each other, reflect on uncertainties, and refine estimates.

The result is a continent-wide map of the Biodiversity Intactness Index (BII), which measures the percentage of original abundances of all species that remain in an area relative to pre-industrial levels (Figure 2). Importantly, this bottom-up method incorporates an understanding of the regional context that is often missing from global biodiversity models that rely on patchy data. For the first time, national and regional decision-makers have access to an indicator built from in-country ecological expertise.

Figure 2a. The BII for terrestrial vertebrates and vascular plants across sub-Saharan Africa. The overall BII score of 76% shows that on average across all indigenous species, 76% of individuals remain compared with intact (pre-modern industrial society) reference populations. Reproduced from: Clements, H et al. A place-based assessment of biodiversity intactness in sub-Saharan Africa. Nature 649, 113–121 (2026). https://doi.org/10.1038/s41586-025-09781-7 

Fig. 2b. The BII across sub-Saharan Africa. BII scores for terrestrial vertebrates and vascular plants collectively, and disaggregated into the constituent species groups. The overall BII score of 76% for the region shows that on average across all indigenous species, 76% of individuals remain compared with intact (pre-modern industrial society) reference populations. Reproduced from: Clements, H et al. A place-based assessment of biodiversity intactness in sub-Saharan Africa. Nature 649, 113–121 (2026). https://doi.org/10.1038/s41586-025-09781-7  

Where biodiversity is lost and remains

The study found large variations across ecosystems, countries and species groups. While plants that can withstand environmental disturbances have experienced declines as small as 10%, large mammals such as elephants, lions and some antelope species have lost more than 75% of their historical abundance. These declines are primarily due to habitat loss for croplands, and unsustainable levels of harvesting and livestock grazing.

Central African countries retain some of the highest levels of intactness due to the persistence of humid forests, while West Africa shows low intactness due to severe degradation of forests and savannas from overharvesting and agricultural expansion. 

Crucially, over 80% of remaining wild populations of plants and animals occur in working lands—forest and rangelands where people coexist with nature. These landscapes support more than 500 million people and underpin crucial ecosystem services such as clean water, pollination, building materials, grazing resources, wild foods and carbon storage.

“This fundamentally shifts where and how we think about biodiversity conservation in Africa,” said Clements. “Protected areas remain vital, especially for Africa’s large mammals, but alone they are insufficient to curb biodiversity loss. Sustainable management of shared working landscapes is key to maintaining biodiversity and supporting livelihoods.” 

“We can learn from successful examples of landscape governance systems, such as sustainable pastoralism practices, community-led wildlife conservancies, and biodiversity-positive farming approaches, that support both conservation and sustainable development.”

Agriculture and rangelands

The assessment also found that cropland expansion is one of the greatest pressures on biodiversity, with the lowest intactness recorded in Nigeria and Rwanda, the two countries with the highest cropland coverage. Intensive, high-yield agriculture reduces habitat diversity and increases chemical inputs, with significant impacts on a wide range of species. In contrast, traditional smallholder systems tend to maintain more ecological complexity and support higher levels of biodiversity.

With cropland projected to double and cereal demand expected to triple by 2050, the authors argue that biodiversity-positive farming practices will be critical to reconciling food security and ecosystem health.

Rangelands—grassy systems where wildlife and livestock graze—are also key, both in harbouring biodiversity and driving losses when intensively managed. The study shows that lower-intensity pastoralism supports higher biodiversity than intensive livestock farming, although increasing restrictions on herd mobility are threatening this balance.

A policy tool

This assessment addresses a major gap for African countries, which often lack the biodiversity information needed to inform policy, reporting and land-use planning. By integrating context-specific local knowledge into a regional measure, decision-makers now have a tool that can be applied across multiple scales.

According to Clements, their findings can support national biodiversity planning and help correct global biodiversity assessments that misrepresent Africa. Their expert-based approach may also be extended to other regions, to better capture local complexities.

“This study showcases the depth of ecological expertise across Africa. By grounding biodiversity measurement in local expertise, we now have a more credible evidence base to support development strategies that sustain both nature and people,” adds Prof Oonsie Biggs, co-director of the CST and co-author on the study.

*This project was made possible by a Jennifer Ward Oppenheimer Research grant that supports African early career researchers to facilitate solutions to the continent’s challenges. 

Source

FOR MEDIA ENQUIRIES

Project website: https://bii4africa.org/

Meet the contributing experts: https://bii4africa.org/category/experts/

Explore the map: https://geethensingh.users.earthengine.app/view/bii

View the bii4africa dataset: https://www.nature.com/articles/s41597-023-02832-6

Learn about biodiversity changes across the region: https://bit.ly/4ajCjNR